Add new option to fetch clinvar somatic classification + patch db for 115 #1794
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Tests fail because of missing method |
nakib103
requested changes
Jan 13, 2025
| @@ -239,6 +239,7 @@ CREATE TABLE `phenotype_feature` ( | |||
| `seq_region_start` int(11) unsigned DEFAULT NULL, | |||
| `seq_region_end` int(11) unsigned DEFAULT NULL, | |||
| `seq_region_strand` tinyint(4) DEFAULT NULL, | |||
| `DNA_type` enum('Germline','Somatic') DEFAULT NULL, | |||
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Needs to add the dna_type_idx as well.
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Ticket: https://www.ebi.ac.uk/panda/jira/browse/ENSVAR-5941
Add option to return new clinvar somatic classification.
To test this code, please point to ensembl-variation update: Ensembl/ensembl-variation#1117